PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG012899.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 346aa    MW: 38152.7 Da    PI: 6.7272
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG012899.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP106.25.1e-33221372113
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..ssssaseceaesssssasnsssg........k 89 
                  +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+ ++sk ++WL+++ak +i++l ++   +++a++++a+ + ++++ ss+         +
  CCG012899.1  22 TGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYYRPSKPVDWLIKKAKSSIDKLDELppWQPAANNANANLEANQNAGSSEMaigeetesS 119
                  79**************************************************************8755555555333333333333333554433332 PP

          TCP  90 aaksaakskksqksaasalnlake 113
                    +++ +++ ++      +n++++
  CCG012899.1 120 GYTFQLHRQLTD------HNPSND 137
                  222222222222......333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.3E-3022132IPR005333Transcription factor, TCP
PROSITE profilePS5136930.8192482IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MGMKSTAGEI IQVQGGHIVR STGRKDRHSK VYTAKGPRDR RVRLSAHTAI QFYDVQDRLG  60
YYRPSKPVDW LIKKAKSSID KLDELPPWQP AANNANANLE ANQNAGSSEM AIGEETESSG  120
YTFQLHRQLT DHNPSNDSSF LAPTIDPDAM KSFFPTSSTN SSMNFQSYPT VISRTTNHTE  180
DLGLSLHSFQ DQGLLHGQSQ ADTTQTPSTD DQTLFEGSAT VGFDANFHRM LAWSNDTNAE  240
NRVVGGFTFN PPPLTTHQAM QAQASAFSQR GPLQSSFPHS IRSWNDLHMA STDHHRTQEF  300
HQSLIFGSRF VSDGLSGFSI PARIHGGDEQ NVVSDRPSSS SPNSQN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002677.10.0PREDICTED: transcription factor TCP4-like
SwissprotQ8LPR53e-70TCP4_ARATH; Transcription factor TCP4
TrEMBLB9IQQ70.0B9IQQ7_POPTR; Uncharacterized protein
STRINGPOPTR_0019s12110.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.32e-63TCP family protein